The focus of this thesis is to help analyse and interpret the results from spectroscopic galaxy surveys and neutral hydrogen ones. Both neutral hydrogen and galaxies trace the dark matter distribution. To maximise the extraction of cosmological information from these observables we need to take into account that each survey has its systematic errors that need to be taken into account to not bias our cosmological conclusions. We discuss if the Baryonic Acoustic Oscillations (BAO) signal could be recovered modelling an Square Kilometre Array (SKA) Neutral Hydrogen (HI) Intensity Mapping survey, taking into account the telescope beam and foreground removal observational effects. We expand the parameter space of Halo Occupation Distribution (HOD) models, allowing a continuous range of variances for the probability distribution function (PDF) applied to model satellite galaxies. We finally validate a method to extract information on non-local primordial non-Gaussianities (PNG), using HOD catalogues of model Luminous Red Galaxies (LRG).
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